arXiv:2509.21028v1 Announce Type: new Abstract: This paper introduces SciTrek, a novel question-answering benchmark designed to evaluate the long-context reasoning capabilities of large language models (LLMs) using scientific articles. Current long-context benchmarks often rely on non-scientific texts, focus on simple information retrieval tasks, or employ artificial contexts. SciTrek addresses these limitations by proposing complex questions that require information aggregation and synthesis across multiple full-text scientific articles. Questions and their ground-truth answers are automatically generated by formulating them as SQL queries over a database constructed from article metadata (titles, authors, and references). The SQL operations provide explicit, verifiable reasoning steps for fine-grained error analysis, and the construction process scales to contexts up to 1M tokens with minimal supervision. Extensive experiments on a diverse set of open-weight and proprietary LLMs demonstrate that SciTrek poses a significant challenge as the context length increases, with supervised fine-tuning and reinforcement learning offering only limited gains. Our analysis reveals systematic shortcomings in models' abilities to perform basic numerical operations and accurately locate specific information in long contexts.
