arXiv:2509.04633v1 Announce Type: cross Abstract: As the complexity of artificial agents increases, the design of environments that can effectively shape their behavior and capabilities has become a critical research frontier. We propose a framework that extends this principle to a novel class of agents: biological neural networks in the form of neural organoids. This paper introduces three scalable, closed-loop virtual environments designed to train organoid-based biological agents and probe the underlying mechanisms of learning, such as long-term potentiation (LTP) and long-term depression (LTD). We detail the design of three distinct task environments with increasing complexity: (1) a conditional avoidance task, (2) a one-dimensional predator-prey scenario, and (3) a replication of the classic Pong game. For each environment, we formalize the state and action spaces, the sensory encoding and motor decoding mechanisms, and the feedback protocols based on predictable (reward) and unpredictable (punishment) stimulation. Furthermore, we propose a novel meta-learning approach where a Large Language Model (LLM) is used to automate the generation and optimization of experimental protocols, scaling the process of environment and curriculum design. Finally, we outline a multi-modal approach for evaluating learning by measuring synaptic plasticity at electrophysiological, cellular, and molecular levels. This work bridges the gap between computational neuroscience and agent-based AI, offering a unique platform for studying embodiment, learning, and intelligence in a controlled biological substrate.